PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G426400.1.p
Common NameSETIT_040030mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 448aa    MW: 47624.2 Da    PI: 7.1788
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G426400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.21.3e-10163219155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  + ++  +++r + g ++ +++Aa+a++ a++k++g
  Seita.9G426400.1.p 163 SIYRGVTRHRWTGRYEAHLWDN-TcRKegQKRRGRQGGYDKEDKAARAYDIAALKYWG 219
                         57*******************3.334565667777799***99*************97 PP

2AP251.23.2e-16262314156
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a++k++ge
  Seita.9G426400.1.p 262 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAALKFRGE 314
                         57****************988532...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.52E-18163227No hitNo description
PfamPF008471.8E-7163219IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-15163228IPR016177DNA-binding domain
SMARTSM003801.8E-19164233IPR001471AP2/ERF domain
PROSITE profilePS5103217.846164227IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-12164228IPR001471AP2/ERF domain
PRINTSPR003671.2E-6165176IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-18262322IPR016177DNA-binding domain
CDDcd000183.82E-11262323No hitNo description
PfamPF008478.5E-11262314IPR001471AP2/ERF domain
PROSITE profilePS5103219.414263321IPR001471AP2/ERF domain
SMARTSM003803.1E-33263327IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-19263321IPR001471AP2/ERF domain
PRINTSPR003671.2E-6303323IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MSPTTNGAIS LGRLGYALAM GAGALPDQLL LPFDDGFTDE DLLAADAALL GGAAADQTLL  60
LLPLCPGASG CGGSPSAEGL GAQAAPASSE ITTAVPAVGA GSFSLARQSA PAPAPASWEV  120
TTAVAADGGG GSPAPAPAPA PAPAPAPPSP GLPLVHNTSN RTSIYRGVTR HRWTGRYEAH  180
LWDNTCRKEG QKRRGRQGGY DKEDKAARAY DIAALKYWGF NATTNFPREN YIREIEEMQN  240
MARQDVVASL RRNSSGFSRG ASIYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFATEEEA  300
AEAYDIAALK FRGENAVTNF EPSRYNLREI AQREIPILSP GRRLNEKPAP EAECQAVLSA  360
PSFSQSQQSS NSLPPYFLPN LQQPHPQPPQ LPLAQPLPIY NYGSGFGFGY GEPSFYWPYG  420
SVEQKVQLDS KLEIVNGLLQ LAKSAAN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0701980.0BT070198.1 Zea mays full-length cDNA clone ZM_BFc0189L07 mRNA, complete cds.
GenBankKJ7275940.0KJ727594.1 Zea mays clone pUT5454 AP2-EREBP transcription factor (EREB26) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984592.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ5YGP71e-101PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2
TrEMBLK4AM930.0K4AM93_SETIT; Uncharacterized protein
STRINGSi040030m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135792631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.22e-79AINTEGUMENTA-like 6